BEDTools is a toolset for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.
More about accessing BEDTools at UCloud
UCloud is a virtual, in-browser platform accessible to researchers at AAU. A limited number of resources is available for trial, otherwise you must apply for resources.