BEDTools (UCloud)

BEDTools is a toolset for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.

 

Go to BEDTools (UCloud)

 

Documentation/help on the use of BEDTools

 

Search for BEDTools in the library search engine (Primo)

More about accessing BEDTools at UCloud

UCloud is a virtual, in-browser platform accessible to researchers at AAU. A limited number of resources is available for trial, otherwise you must apply for resources.

 

More information about UCloud