Salmon (UCloud)

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines.

 

Go to Salmon (UCloud)

 

Documentation/help on the use of Salmon

 

Search for Salmon in the library search engine (Primo)

More about accessing Salmon at UCloud

UCloud is a virtual, in-browser platform accessible to researchers at AAU. A limited number of resources is available for trial, otherwise you must apply for resources.

 

More information about UCloud