Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines.
More about accessing Salmon at UCloud
UCloud is a virtual, in-browser platform accessible to researchers at AAU. A limited number of resources is available for trial, otherwise you must apply for resources.